ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
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- Angsd structure
- Base quality
- Citing angsd
- Covariance matrix for PCA
- Direct Ancestry
- Error estimation method
- Example of a covariance file
- Example of a covariate file
- Example of a quantitative phenotype file
- Example of cases control phenotype file
- Fst correctness
- Genotype likelihoods from alignments new
- Glf files
- HWE test
- Haploid calling
- Memory Usage
- Misc example
- SNP Calling