ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
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<classdiagram>
[sequence data]->[genotype;likelihoods]
[bam files{bg:orange}]->[sequence data]
[SOAP files{bg:orange}]->[sequence data]
[sequence data]->[phat estimates;error estimates{bg:blue}]
[glf files{bg:orange}]->[genotype;likelihoods] [genotype;likelihoods]->[genotype;probabilities] [genotype;likelihoods]->[glf files;beagle files;MAF estimates;MAF associations;SNP Calling;realSFS;error estimates;Inbreeding{bg:blue}] [beagle output{bg:orange}]->[genotype;probabilities] [genotype;probabilities]->[genotype calling;MAF estimates;associations{bg:blue}]
</classdiagram>
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