There has been some confusion about the versions of ANGSD.
- Even versions are freezes from the last odd giversion
- Odd versions are git versions. Once there has been enough commits we will increment and make a release.
Download and Installation
To download and use ANGSD you need to download the htslib and the angsd source folder
You can either download the angsd0.934.tar.gz which contains both. 
Or you can use github for the latest version of both htslib and angsd
Download and unpack the tarball, enter the directory and type make. Users on a mac computer, can use curl instead of wget.
The software can be compiled using make.
wget http://popgen.dk/software/download/angsd/angsd0.936.tar.gz tar xf angsd0.936.tar.gz cd htslib;make;cd .. cd angsd make HTSSRC=../htslib cd ..
The executable then located in angsd/angsd.
Install from github
To install CRAM support you also need to install htslib and can be done using the following commands
git clone --recursive https://github.com/samtools/htslib.git git clone https://github.com/ANGSD/angsd.git cd htslib;make;cd ../angsd ;make HTSSRC=../htslib
Systemwide installation of htslib?
Then you just type make in the angsd directory