ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Albrecht
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4 December 2015
- 11:2711:27, 4 December 2015 diff hist +234 Input No edit summary
- 11:2211:22, 4 December 2015 diff hist +12 Input No edit summary
- 11:2011:20, 4 December 2015 diff hist −367 Quick Start No edit summary
- 11:1911:19, 4 December 2015 diff hist −161 Quick Start →Examples
- 10:5610:56, 4 December 2015 diff hist +12 Quick Start →Ancestral fasta file for hg19
- 10:5210:52, 4 December 2015 diff hist +33 Quick Start No edit summary
- 10:4910:49, 4 December 2015 diff hist −92 MediaWiki:Sitenotice No edit summary
19 November 2015
- 17:1317:13, 19 November 2015 diff hist +35 MediaWiki:Sidebar No edit summary
12 November 2015
- 20:1920:19, 12 November 2015 diff hist +103 MsToGlf No edit summary
11 July 2015
- 15:5115:51, 11 July 2015 diff hist +811 Contamination No edit summary current
28 June 2015
- 14:0114:01, 28 June 2015 diff hist +1 Plink No edit summary
5 April 2015
- 19:5219:52, 5 April 2015 diff hist +318 Genotype calling →options
15 December 2014
- 19:5019:50, 15 December 2014 diff hist −8 SYKmaf Undo revision 2344 by Albrecht (talk) current
- 19:4919:49, 15 December 2014 diff hist +8 SYKmaf →ML estimator with unknown minor
25 August 2014
- 13:5813:58, 25 August 2014 diff hist −566 Association →Output
- 13:5613:56, 25 August 2014 diff hist +228 Association →Score statistic
- 13:4913:49, 25 August 2014 diff hist +201 Change log →Latest
27 June 2014
- 14:3514:35, 27 June 2014 diff hist −1,005 Contamination →method
- 14:3514:35, 27 June 2014 diff hist +1,005 N Rasmussen2011 Created page with "[http://www.ncbi.nlm.nih.gov/entrez?Db=pubmed&Cmd=ShowDetailView&uid=21940856 PMID 21940856], [http://www.bioinformatics.org/texmed/cgi-bin/list.cgi?PMID=21940856 bibtex ] Ras..." current
- 14:3414:34, 27 June 2014 diff hist +59 Citing angsd No edit summary
- 14:3214:32, 27 June 2014 diff hist +174 Orlando2013 No edit summary current
- 14:2914:29, 27 June 2014 diff hist +1,084 Contamination No edit summary
- 14:0614:06, 27 June 2014 diff hist +35 Contamination No edit summary
- 13:5913:59, 27 June 2014 diff hist +401 Contamination →Output
26 June 2014
- 13:2213:22, 26 June 2014 diff hist +14 Thetas,Tajima,Neutrality tests →Example
- 13:1813:18, 26 June 2014 diff hist −65 Thetas,Tajima,Neutrality tests →Example
- 13:1613:16, 26 June 2014 diff hist +203 Thetas,Tajima,Neutrality tests →Example
- 12:4512:45, 26 June 2014 diff hist +131 Major Minor No edit summary
- 12:4212:42, 26 June 2014 diff hist +53 Major Minor →Pre specified Major using a reference
- 12:4112:41, 26 June 2014 diff hist −1 Major Minor →Pre specified Major using a reference
- 12:3412:34, 26 June 2014 diff hist −34 User:Albrecht Blanked the page current
24 June 2014
- 12:4612:46, 24 June 2014 diff hist +3 Input →Brief Overview
13 May 2014
- 17:1517:15, 13 May 2014 diff hist +556 Genotype Likelihoods →Output
23 April 2014
- 16:1916:19, 23 April 2014 diff hist +190 Major Minor No edit summary
- 16:1616:16, 23 April 2014 diff hist −111 MediaWiki:Sitenotice No edit summary
- 16:1516:15, 23 April 2014 diff hist +12 ANGSD No edit summary
6 March 2014
- 13:2613:26, 6 March 2014 diff hist −8 SFS Estimation →How to plot
- 13:2513:25, 6 March 2014 diff hist −6 SFS Estimation →How to plot
- 13:2513:25, 6 March 2014 diff hist −19 SFS Estimation →Format specification of binary .saf file
- 13:2113:21, 6 March 2014 diff hist −56 SFS Estimation →Folded spectra
- 13:1613:16, 6 March 2014 diff hist +49 SFS Estimation →Interpretation of the emOptim2 output file
- 13:1513:15, 6 March 2014 diff hist +347 SFS Estimation →Options
- 12:2712:27, 6 March 2014 diff hist +148 SFS Estimation →Options
- 12:2612:26, 6 March 2014 diff hist +52 SFS Estimation →Posterior per-site distributions of the sample allele frequency
- 12:2312:23, 6 March 2014 diff hist +13 SFS Estimation →Interpretation of output file
- 12:2312:23, 6 March 2014 diff hist +47 SFS Estimation →Interpretation of output file
- 12:2012:20, 6 March 2014 diff hist −3 SFS Estimation →Example
- 12:2012:20, 6 March 2014 diff hist +155 SFS Estimation →Example
- 12:1812:18, 6 March 2014 diff hist +188 SFS Estimation →Brief Overview
- 12:1712:17, 6 March 2014 diff hist −64 SFS Estimation →Example
- 12:1612:16, 6 March 2014 diff hist +98 SFS Estimation →Example
- 12:1512:15, 6 March 2014 diff hist −1 SFS Estimation →Example
- 12:1112:11, 6 March 2014 diff hist +1 SFS Estimation →How to plot
- 12:1012:10, 6 March 2014 diff hist +43 SFS Estimation →How to plot
- 12:0912:09, 6 March 2014 diff hist −2,070 SFS Estimation →Theory
- 12:0912:09, 6 March 2014 diff hist −11 RealSFSmethod →Theory
- 12:0812:08, 6 March 2014 diff hist +2,068 N RealSFSmethod Created page with "=Theory= <pre> We will try to elaborate on the theory behind the methods. Below is only a preliminary version of the theory. </pre> This method is described in Nielsen2012..."
- 12:0812:08, 6 March 2014 diff hist +6 SFS Estimation No edit summary
- 12:0812:08, 6 March 2014 diff hist +2 SFS Estimation No edit summary
- 12:0812:08, 6 March 2014 diff hist +64 SFS Estimation No edit summary
- 12:0612:06, 6 March 2014 diff hist +161 SFS Estimation →Options
- 12:0312:03, 6 March 2014 diff hist +67 SFS Estimation No edit summary
- 11:5311:53, 6 March 2014 diff hist −9 Thetas,Tajima,Neutrality tests →Example
- 11:5211:52, 6 March 2014 diff hist −9 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 11:5211:52, 6 March 2014 diff hist +4 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 11:5111:51, 6 March 2014 diff hist +4 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 11:5011:50, 6 March 2014 diff hist −4 Thetas,Tajima,Neutrality tests →Example
- 11:5011:50, 6 March 2014 diff hist +16 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 11:4611:46, 6 March 2014 diff hist +26 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 11:4411:44, 6 March 2014 diff hist +170 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 11:4011:40, 6 March 2014 diff hist +33 Thetas,Tajima,Neutrality tests →Sliding Window example
- 11:3811:38, 6 March 2014 diff hist +129 Thetas,Tajima,Neutrality tests →.thetas.gz is
- 11:3711:37, 6 March 2014 diff hist +67 Thetas,Tajima,Neutrality tests →Example
- 11:3611:36, 6 March 2014 diff hist −18 Thetas,Tajima,Neutrality tests →Sliding Window example
- 11:2711:27, 6 March 2014 diff hist +1 Thetas,Tajima,Neutrality tests →Example
- 11:2511:25, 6 March 2014 diff hist +72 Thetas,Tajima,Neutrality tests →Example
- 11:0911:09, 6 March 2014 diff hist +39 Thetas,Tajima,Neutrality tests →Example
5 March 2014
- 20:1520:15, 5 March 2014 diff hist +1 Filters →Extra
- 20:1420:14, 5 March 2014 diff hist +16 Plink →Example
- 20:1220:12, 5 March 2014 diff hist −11 Filters →Extra
- 20:1220:12, 5 March 2014 diff hist −2 Plink →Example
- 20:0920:09, 5 March 2014 diff hist 0 Plink No edit summary
- 20:0820:08, 5 March 2014 diff hist 0 Plink →Example
- 20:0120:01, 5 March 2014 diff hist −5 Plink No edit summary
- 20:0020:00, 5 March 2014 diff hist +38 MediaWiki:Sidebar No edit summary
- 19:3819:38, 5 March 2014 diff hist +29 Association →Example with imputation (using BEAGLE)
- 19:3619:36, 5 March 2014 diff hist +556 Association →Example with imputation (using BEAGLE)
- 19:3519:35, 5 March 2014 diff hist +279 Input →Genotype Probability Files
- 19:1819:18, 5 March 2014 diff hist −998 Bugs No edit summary
- 19:1019:10, 5 March 2014 diff hist +418 Association →Example
- 19:0619:06, 5 March 2014 diff hist −39 MediaWiki:Sidebar No edit summary
- 19:0519:05, 5 March 2014 diff hist +405 Beagle input →output
- 18:5918:59, 5 March 2014 diff hist −29 Beagle input →Example
- 18:5818:58, 5 March 2014 diff hist +139 Beagle input No edit summary
- 18:5418:54, 5 March 2014 diff hist −45 SNP calling No edit summary
26 February 2014
- 20:0420:04, 26 February 2014 diff hist +11 SNP calling No edit summary
- 18:4318:43, 26 February 2014 diff hist −43 Allele Frequencies →.mafs
- 18:4318:43, 26 February 2014 diff hist −1 Allele Frequencies →.mafs
- 18:4318:43, 26 February 2014 diff hist +8 Allele Frequencies →.mafs
- 18:4018:40, 26 February 2014 diff hist +105 Allele Frequencies →.mafs