ANGSD: Analysis of next generation Sequencing Data

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Orlando2013

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PMID 23803765, bibtex 

Orlando, L, Ginolhac, A, Zhang, G, Froese, D, Albrechtsen, A, Stiller, M, Schubert, M, Cappellini, E, Petersen, B, Moltke, I, Johnson, PL, Fumagalli, M, Vilstrup, JT, Raghavan, M, Korneliussen, T, Malaspinas, AS, Vogt, J, Szklarczyk, D, Kelstrup, CD, Vinther, J, Dolocan, A, Stenderup, J, Velazquez, AM, Cahill, J, Rasmussen, M, Wang, X, Min, J, Zazula, GD, Seguin-Orlando, A, Mortensen, C, Magnussen, K, Thompson, JF, Weinstock, J, Gregersen, K, Røed, KH, Eisenmann, V, Rubin, CJ, Miller, DC, Antczak, DF, Bertelsen, MF, Brunak, S, Al-Rasheid, KA, Ryder, O, Andersson, L, Mundy, J, Krogh, A, Gilbert, MT, Kjær, K, Sicheritz-Ponten, T, Jensen, LJ, Olsen, JV, Hofreiter, M, Nielsen, R, Shapiro, B, Wang, J, Willerslev, E (2013). Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse. Nature, 499, 7456:74-8.