ANGSD: Analysis of next generation Sequencing Data

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Showing below up to 73 results in range #21 to #93.

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  1. Nielsen2012‏‎ (11:31, 29 June 2013)
  2. Li2011‏‎ (11:38, 29 June 2013)
  3. Gatk‏‎ (11:43, 29 June 2013)
  4. Base quality‏‎ (09:17, 30 September 2013)
  5. Korneliussen2013‏‎ (15:03, 3 October 2013)
  6. Angsd structure‏‎ (20:03, 4 December 2013)
  7. Changes‏‎ (19:02, 17 December 2013)
  8. Depth‏‎ (13:16, 3 January 2014)
  9. Tutorial‏‎ (01:31, 10 January 2014)
  10. MajorMinor Method‏‎ (15:15, 26 February 2014)
  11. ErrorSykMethod‏‎ (17:12, 26 February 2014)
  12. ErrorPerfect‏‎ (17:15, 26 February 2014)
  13. PostFreq‏‎ (17:44, 26 February 2014)
  14. Orlando2013‏‎ (14:32, 27 June 2014)
  15. Rasmussen2011‏‎ (14:35, 27 June 2014)
  16. RealSFSmethod‏‎ (13:23, 30 June 2014)
  17. Misc example‏‎ (11:55, 31 July 2014)
  18. SYKmaf‏‎ (19:50, 15 December 2014)
  19. Bugs‏‎ (17:05, 26 February 2015)
  20. NgsRelate‏‎ (10:23, 20 June 2015)
  21. Contamination‏‎ (15:51, 11 July 2015)
  22. Fst PCA‏‎ (16:21, 30 July 2015)
  23. Fst correctness‏‎ (16:27, 30 July 2015)
  24. Citing angsd‏‎ (10:08, 31 August 2015)
  25. Pbs‏‎ (18:38, 8 October 2015)
  26. Sites‏‎ (16:00, 16 November 2015)
  27. Major Minor‏‎ (14:56, 4 December 2015)
  28. Quick Start‏‎ (14:58, 4 December 2015)
  29. ANGSD‏‎ (15:07, 4 December 2015)
  30. Supersim‏‎ (16:18, 4 December 2015)
  31. Glcomparison‏‎ (17:44, 5 February 2016)
  32. Safv3‏‎ (17:47, 5 February 2016)
  33. Abbababa‏‎ (11:46, 11 March 2016)
  34. Genotype Distribution‏‎ (11:16, 14 July 2016)
  35. Direct Ancestry‏‎ (22:33, 8 November 2016)
  36. Error estimation‏‎ (13:57, 12 January 2017)
  37. Heterozygosity‏‎ (13:51, 24 January 2017)
  38. SnpFilters‏‎ (21:24, 27 June 2017)
  39. HWE test‏‎ (15:32, 23 October 2017)
  40. Beagle input‏‎ (18:53, 6 November 2017)
  41. NGSadmix‏‎ (16:44, 7 February 2018)
  42. PCA‏‎ (16:56, 7 February 2018)
  43. HWE and Inbreeding estimates‏‎ (16:59, 7 February 2018)
  44. ThetaStat‏‎ (11:10, 20 April 2018)
  45. Abbababa2‏‎ (11:34, 26 June 2018)
  46. Plink‏‎ (17:26, 30 April 2019)
  47. LD‏‎ (10:57, 17 July 2019)
  48. 2d SFS Estimation‏‎ (03:26, 17 August 2019)
  49. Fst‏‎ (03:38, 17 August 2019)
  50. Relatedness‏‎ (09:21, 29 August 2019)
  51. Filters‏‎ (08:49, 15 November 2019)
  52. PCA MDS‏‎ (17:26, 20 April 2020)
  53. Allele Counts‏‎ (06:34, 2 May 2020)
  54. Thetas,Tajima,Neutrality tests‏‎ (14:40, 27 August 2020)
  55. Haploid calling‏‎ (11:21, 27 October 2020)
  56. MsToGlf‏‎ (16:01, 26 July 2021)
  57. Genotype Likelihoods‏‎ (10:56, 28 September 2021)
  58. Input‏‎ (10:57, 28 September 2021)
  59. Genotype likelihoods from alignments new‏‎ (10:57, 28 September 2021)
  60. SNP calling‏‎ (10:59, 28 September 2021)
  61. Genotype calling‏‎ (23:14, 2 March 2022)
  62. Mismatch‏‎ (23:28, 2 March 2022)
  63. DistAngsd‏‎ (09:41, 23 March 2022)
  64. RealSFS‏‎ (13:20, 26 June 2022)
  65. Change log‏‎ (13:59, 16 July 2022)
  66. Thorfinn‏‎ (14:04, 16 July 2022)
  67. Fasta‏‎ (18:45, 6 February 2023)
  68. Association‏‎ (15:32, 7 June 2023)
  69. Allele Frequencies‏‎ (12:16, 8 June 2023)
  70. Vcf‏‎ (23:53, 21 June 2023)
  71. Test‏‎ (11:05, 24 October 2023)
  72. SFS Estimation‏‎ (16:22, 8 December 2023)
  73. Installation‏‎ (23:25, 8 December 2023)

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