ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.934/0.935 on github), see Change_log for changes, and download it here.

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  1. SFS Estimation‏‎ (265 revisions)
  2. Association‏‎ (187 revisions)
  3. Genotype Likelihoods‏‎ (161 revisions)
  4. Thetas,Tajima,Neutrality tests‏‎ (154 revisions)
  5. Installation‏‎ (145 revisions)
  6. ANGSD‏‎ (141 revisions)
  7. Input‏‎ (125 revisions)
  8. Error estimation‏‎ (105 revisions)
  9. Change log‏‎ (102 revisions)
  10. Filters‏‎ (86 revisions)
  11. Quick Start‏‎ (82 revisions)
  12. Allele Frequencies‏‎ (67 revisions)
  13. Allele Counts‏‎ (62 revisions)
  14. Fst PCA‏‎ (60 revisions)
  15. Abbababa2‏‎ (54 revisions)
  16. Fasta‏‎ (54 revisions)
  17. RealSFS‏‎ (53 revisions)
  18. Bugs‏‎ (50 revisions)
  19. Major Minor‏‎ (46 revisions)
  20. Sites‏‎ (45 revisions)
  21. 2d SFS Estimation‏‎ (43 revisions)
  22. MsToGlf‏‎ (39 revisions)
  23. Tutorial‏‎ (39 revisions)
  24. PCA MDS‏‎ (39 revisions)
  25. Thorfinn‏‎ (36 revisions)
  26. Abbababa‏‎ (31 revisions)
  27. Contamination‏‎ (29 revisions)
  28. Genotype calling‏‎ (26 revisions)
  29. Plink‏‎ (24 revisions)
  30. Fst‏‎ (23 revisions)
  31. Citing angsd‏‎ (23 revisions)
  32. Relatedness‏‎ (21 revisions)
  33. HWE and Inbreeding estimates‏‎ (20 revisions)
  34. Safv3‏‎ (20 revisions)
  35. HWE test‏‎ (19 revisions)
  36. SnpFilters‏‎ (18 revisions)
  37. Heterozygosity‏‎ (16 revisions)
  38. Authors‏‎ (14 revisions)
  39. Beagle input‏‎ (13 revisions)
  40. Depth‏‎ (13 revisions)
  41. Angsd structure‏‎ (11 revisions)
  42. NGSadmix‏‎ (10 revisions)
  43. Haploid calling‏‎ (9 revisions)
  44. SNP calling‏‎ (8 revisions)
  45. Genotype likelihoods from alignments new‏‎ (8 revisions)
  46. Introduction‏‎ (8 revisions)
  47. Glcomparison‏‎ (8 revisions)
  48. Base quality‏‎ (7 revisions)
  49. PCA‏‎ (7 revisions)
  50. Genotype Distribution‏‎ (6 revisions)

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