ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Albrecht
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14 June 2012
- 22:0222:02, 14 June 2012 diff hist +240 N Allele Frequencies Created page with "==Allele Frequency estimation== -doMaf INT INT=1 bfgs known minor INT=2 EM known minor INT=4 BFGS unknown minor INT=8 EM unknown minor ===Phat estimator=== ===ML est..."
- 21:5921:59, 14 June 2012 diff hist −242 ANGSD →Allele Frequency estimation
- 21:5921:59, 14 June 2012 diff hist −460 ANGSD →Inferring Major and Minor alleles
- 21:4121:41, 14 June 2012 diff hist +1,183 N Majorminor Created page with "Assuming that the considered site is diallelic, we infer those two alleles using the genotype likelihoods. Let <math>\{M,m\}</math> denote the two possible alleles at the dial..." current
- 21:4121:41, 14 June 2012 diff hist +179 N Skotte Created page with "Line Skotte, Thorfinn Sand Korneliussen, Anders Albrechtsen. Association testing for next-generation sequencing data using score statistics. Genet Epidemiol. 2012 Jul;36(5):43..."
- 21:4021:40, 14 June 2012 diff hist +256 N Li2010 Created page with "Li Y, Vinckenbosch N, Tian G, Huerta-Sanchez E, Jiang T, Jiang H, Albrechtsen A, Andersen G, Cao H, Korneliussen T, et al., 2010. Resequencing of 200 human exomes identifies a..." current
- 21:3921:39, 14 June 2012 diff hist +1,015 Major Minor No edit summary
- 20:2320:23, 14 June 2012 diff hist −3 Input →optional arguments
- 20:2320:23, 14 June 2012 diff hist +179 Input →optional arguments
- 20:2120:21, 14 June 2012 diff hist +181 Input →obtional arguments
- 19:4519:45, 14 June 2012 diff hist +569 Input →bam files
- 19:2119:21, 14 June 2012 diff hist −3 Input →options
- 19:2119:21, 14 June 2012 diff hist −6 Input →Mapped sequence file
- 19:2119:21, 14 June 2012 diff hist +830 Input No edit summary
- 19:1619:16, 14 June 2012 diff hist −17 Input →Mapped sequence file
- 19:0219:02, 14 June 2012 diff hist −4 Input →example
- 18:5718:57, 14 June 2012 diff hist +285 N Installation Created page with "=Download= The source code is avaible as a tarball and be download here [http://popgen.dk/software/download/angsd/angsd0.3.tar.gz] =Install= Unpack the tarball ===Unix=== Th..."
11 June 2012
- 17:0917:09, 11 June 2012 diff hist +1 Input →example
- 16:5216:52, 11 June 2012 diff hist +988 Input →beagle format
- 12:2912:29, 11 June 2012 diff hist +26 MediaWiki:Sidebar No edit summary