ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.

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** Download_and_installation|Installation
** Download_and_installation|Installation
** Quick_start|Quick start
** Quick_start|Quick start
** Input|input data
** Input|Input data
** change_log|version log
** change_log|Version log
** citing_angsd|citing angsd
** citing_angsd|Citing angsd
** authors|Authors
** authors|Authors
** Bugs | Bugs
** Bugs | Bugs
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* Output
* Output
** beagle_input|beagle input files
** beagle_input|Beagle input files
** Glf_files|Genotype likelihood files
** Glf_files|Genotype likelihood files
** filters | filter output
** filters | Filter output


* navigation
* navigation

Revision as of 21:17, 23 October 2012

  • Pages
    • Main_Page#Overview|Overview
    • Download_and_installation|Installation
    • Quick_start|Quick start
    • Input|Input data
    • change_log|Version log
    • citing_angsd|Citing angsd
    • authors|Authors
    • Bugs | Bugs
  • Summaries
    • alleles_counts|Allele counts
    • depth|Depth
    • base_quality|Base quality
  • Methods
    • realSFS|SFS estimation
    • Genotype_likelihoods_from_alignments|Genotypes likelihoods
    • Inferring_Major_and_Minor_alleles|Major and Minor
    • Error estimation|Error estimation
    • Allele_Frequency_estimation|Allele frequencies
    • Association|Association
    • Genotype_calling|Genotype calling
    • SNP_calling|SNP Calling
  • Output
    • beagle_input|Beagle input files
    • Glf_files|Genotype likelihood files
    • filters | Filter output
  • navigation
    • mainpage|mainpage-description
    • portal-url|portal
    • currentevents-url|currentevents
    • recentchanges-url|recentchanges
    • randompage-url|randompage
    • helppage|help
  • SEARCH
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