ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
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** Genotype_calling|Genotype calling | ** Genotype_calling|Genotype calling | ||
** SNP_calling|SNP Calling | ** SNP_calling|SNP Calling | ||
* Output | * Output | ||
Revision as of 15:10, 21 September 2012
- Pages
- Main_Page#Overview|Overview
- Download_and_installation|Installation
- Input|input data
- change_log|version log
- Summaries
- alleles_counts|Allele counts
- depth|Depth
- base_quality|Base quality
- Methods
- realSFS|realSFS
- Genotype_likelihoods_from_alignments|Genotypes likelihoods
- Inferring_Major_and_Minor_alleles|Major and Minor
- Error_estimation|Error estimation
- Allele_Frequency_estimation|Allele frequencies
- SNP_Calling|SNP Calling
- Covariance_matrix_for_PCA|PCA
- Association|Association
- Heterozygosity|Heterozogosity
- HWE_and_Inbreeding_estimates|HWE and inbreeding
- Genotype_calling|Genotype calling
- SNP_calling|SNP Calling
- Output
- beagle_input|beagle input files
- Glf_files|Genotype likelihood files
- filters | filter output
- navigation
- mainpage|mainpage-description
- portal-url|portal
- currentevents-url|currentevents
- recentchanges-url|recentchanges
- randompage-url|randompage
- helppage|help
- SEARCH
- TOOLBOX
- LANGUAGES