ANGSD: Analysis of next generation Sequencing Data
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Genotype Likelihoods: Difference between revisions
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; -GL [int] | ; -GL [int] | ||
If your input is sequencing file you can estimate genotype likelhoods from the mapped reads. Four different methods are available. | If your input is sequencing file you can estimate genotype likelhoods from the mapped reads. Four different methods are available. | ||
===Samtools=== | ===Samtools=== | ||
-GL 1 | -GL 1 | ||
===GATK=== | ===GATK=== | ||
-GL 2 | -GL 2 | ||
===soapSNP=== | |||
-GL 3 | |||
===Kim et al.=== | ===Kim et al.=== | ||
-GL | -GL 4 | ||
[[Kim10|Citation]] [[Kim11|Citation]] | [[Kim10|Citation]] [[Kim11|Citation]] | ||