ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.

Base quality

From angsd
Revision as of 17:11, 19 September 2012 by Albrecht (talk | contribs) (Created page with "=Base quality counts= Counts the number of bases for each quality. ==Example== Print the individuals depth from bam files <pre> ./angsd -out out -doCounts 1 -doQsDist 1 -ba...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

Base quality counts

Counts the number of bases for each quality.


Example

Print the individuals depth from bam files 

./angsd -out out -doCounts 1 -doQsDist 1 -bam bam.filelist
Retrieved from "https://www.popgen.dk/angsd/index.php?title=Base_quality&oldid=209"