ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Albrecht
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4 October 2018
- 08:3508:35, 4 October 2018 diff hist +1 PCA MDS →sampled bases *ibs.gz
- 08:3108:31, 4 October 2018 diff hist +4 PCA MDS →sampled bases *ibs.gz
18 May 2018
- 13:1413:14, 18 May 2018 diff hist +69 Genotype Likelihoods →SYK (Kim et al.)
30 April 2018
- 12:3712:37, 30 April 2018 diff hist +27 N Dodepth Redirected page to Allele Counts current
- 12:3612:36, 30 April 2018 diff hist +27 N Docounts Redirected page to Allele Counts current
2 April 2018
- 11:0211:02, 2 April 2018 diff hist +28 N Docount Redirected page to Allele Counts current
- 11:0111:01, 2 April 2018 diff hist +30 N Dogeno Redirected page to Genotype calling current
- 11:0011:00, 2 April 2018 diff hist +25 N Domajorminor Redirected page to Major Minor current
- 10:5910:59, 2 April 2018 diff hist +32 N Rmtriallelic Redirected page to Allele Frequencies current
- 10:5810:58, 2 April 2018 diff hist +32 N Snp pval Redirected page to Allele Frequencies current
- 10:5710:57, 2 April 2018 diff hist +32 N Dopost Redirected page to Allele Frequencies current
- 10:5610:56, 2 April 2018 diff hist +32 N Domaf Redirected page to Allele Frequencies current
- 10:5310:53, 2 April 2018 diff hist +71 Allele Frequencies No edit summary
- 10:5210:52, 2 April 2018 diff hist −3 MediaWiki:Common.css No edit summary current
- 10:5010:50, 2 April 2018 diff hist +3 MediaWiki:Common.css No edit summary
- 10:4910:49, 2 April 2018 diff hist +54 Allele Frequencies No edit summary
- 10:4810:48, 2 April 2018 diff hist +82 N MediaWiki:Common.css Created page with "→CSS placed here will be applied to all skins: .keywords { display: none; }"
12 March 2018
- 16:3916:39, 12 March 2018 diff hist +471 PCA MDS No edit summary
7 February 2018
- 15:5915:59, 7 February 2018 diff hist −1 HWE and Inbreeding estimates →Site estimate of inbreeding coefficient (HWE test) current
- 15:5815:58, 7 February 2018 diff hist −24 MediaWiki:Sidebar No edit summary
- 15:5615:56, 7 February 2018 diff hist +65 PCA →single read sampling current
- 15:5515:55, 7 February 2018 diff hist +20 PCA →NGS tools
- 15:5415:54, 7 February 2018 diff hist +729 PCA No edit summary
- 15:5415:54, 7 February 2018 diff hist 0 N File:Pcangsd pca.png No edit summary current
- 15:4415:44, 7 February 2018 diff hist +303 NGSadmix No edit summary current
- 15:1515:15, 7 February 2018 diff hist +112 NGSadmix No edit summary
- 15:1515:15, 7 February 2018 diff hist 0 N File:AdmixtureNGS.png No edit summary current
19 January 2018
- 13:5913:59, 19 January 2018 diff hist +1 Genotype calling →Options
- 13:5813:58, 19 January 2018 diff hist +95 Genotype calling →Options
10 August 2017
- 09:3209:32, 10 August 2017 diff hist +18 Association →Output
- 09:3109:31, 10 August 2017 diff hist +95 Association →problems with inflation of p-values
- 09:2709:27, 10 August 2017 diff hist +20 Association →problems with inflation of p-values
- 09:2609:26, 10 August 2017 diff hist +341 Association →problems with inflation of p-values
- 09:2309:23, 10 August 2017 diff hist +1,293 Association No edit summary
- 09:1309:13, 10 August 2017 diff hist +11 Association No edit summary
- 09:1209:12, 10 August 2017 diff hist +142 Association →Dependency Chain
18 July 2017
- 14:3814:38, 18 July 2017 diff hist −1 HWE test →options
- 14:3814:38, 18 July 2017 diff hist +305 HWE test No edit summary
- 14:1014:10, 18 July 2017 diff hist −1 HWE test →example
- 14:0814:08, 18 July 2017 diff hist +164 HWE test →example
- 13:5113:51, 18 July 2017 diff hist +2 HWE test →Use as a filter
- 13:5013:50, 18 July 2017 diff hist +13 HWE test No edit summary
- 13:5013:50, 18 July 2017 diff hist −181 HWE test No edit summary
3 March 2017
- 11:1611:16, 3 March 2017 diff hist +170 Filters →Number of non missing individuals
- 10:5810:58, 3 March 2017 diff hist −31 Filters →Extra
- 10:5610:56, 3 March 2017 diff hist +226 Filters →Extra
24 January 2017
- 13:3913:39, 24 January 2017 diff hist −1 Filters →Selected Sites
- 13:2613:26, 24 January 2017 diff hist +151 PCA MDS →Options
- 13:2413:24, 24 January 2017 diff hist +2 PCA MDS →single read sampling approach for PCA or MDS
- 13:2313:23, 24 January 2017 diff hist +263 PCA MDS No edit summary