ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.

RealSFS

From angsd
Revision as of 16:22, 3 October 2013 by Thorfinn (talk | contribs)
Jump to navigation Jump to search

This program will estimate the SFS based on a .sfs file generated from the ./angsd [options] -doRealSFS .

Brief overview

./emOptim2 afile.sfs nChr [-start FNAME -P nThreads -tole tole -maxIter  -nSites ]
nChr is the number of chromosomes. (twice the number of diploid invididuals)

Output

Main results are printed to the stdout. Values are in logspace.

Retrieved from "https://www.popgen.dk/angsd/index.php?title=RealSFS&oldid=891"