ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.

Bugs

From angsd
Revision as of 22:08, 5 December 2012 by Thorfinn (talk | contribs)
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  • fix the maxsize of a chr now its 270e6
  • fix queing of finished threads.

Limitation

RG tags are not implemented.


small changes that would be nice

  • check numSites==0 in all generals: derived classes.
  • check if subdirs exists in outputfiles. Otherwise subtle crash.
  • Only print the
If you have selected more than one MAF estimator we will choose in following order
   1. knownminor bfgs
   2. knownminor EM
   3. unknownminor bfgs
   4. unknownminor EM
   5. Posterior maf

If use has selected multple mafs estimators.

  • write about single bam -i on wiki
  • should rna be implemented
  • make faster the filter output
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