Installation

Download and Installation

To download and use ANGSD you need to download the htslib and the angsd source folder

You can either download the angsd0.901.tar.gz which contains both. [1]

Or you can use github for the latest version of both htslib and angsd

Earlier versions from here: http://popgen.dk/software/download/angsd/ And here: https://github.com/ANGSD/angsd/releases

Install from github

To install CRAM support you also need to install htslib and can be done using the following commands

git clone https://github.com/samtools/htslib.git
git clone git://github.com/ANGSD/angsd.git 
cd angsd
make