ANGSD: Analysis of next generation Sequencing Data

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Citing angsd

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Revision as of 14:47, 21 September 2012 by Albrecht (talk | contribs) (Created page with "Currently there is not publication for angsd. However, many of the method implimented here are published. **Methods** allele estimation from genotype likelihoods ;- doMaf ...")
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Currently there is not publication for angsd. However, many of the method implimented here are published.

    • Methods**

allele estimation from genotype likelihoods

- doMaf

kim11

SNP calling based on genotype likelihoods kim11

Genotype likelihoods

-GL 1

same as in samtools li10

-GL 2

same as in gatk gatk

-GL 3

same as in soapSNP soapSNP

-GL 4
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