ANGSD: Analysis of next generation Sequencing Data

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Base quality

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Revision as of 16:11, 19 September 2012 by Albrecht (talk | contribs) (Created page with "=Base quality counts= Counts the number of bases for each quality. ==Example== Print the individuals depth from bam files <pre> ./angsd -out out -doCounts 1 -doQsDist 1 -ba...")
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Base quality counts

Counts the number of bases for each quality.


Example

Print the individuals depth from bam files 

./angsd -out out -doCounts 1 -doQsDist 1 -bam bam.filelist
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