ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
Angsd structure
This page contains a short description of the overall structure of angsd.
It can be divided into:
- Filereading
- Analysis
Input formats
We allow for many different input formats, many of these are deprecated and have little use, but we have decided to keep these.
- BAM files
- soap alignment files
- Beagle files
- glfv3 (Binary and text)
History
Angsd started back in 2009 as a simple program for estimating allele frequency, based on this we incrementally added new functionality. A rough timeline can be found in the AUTHORS file in the program bundle