ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Thorfinn
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2 November 2017
- 20:2120:21, 2 November 2017 diff hist +17 Input →Genotype Likelihood Files
- 20:2020:20, 2 November 2017 diff hist +87 Input →-glf
1 November 2017
- 14:0814:08, 1 November 2017 diff hist −18 Input →Arguments
23 October 2017
- 14:3214:32, 23 October 2017 diff hist +1 HWE test →example current
12 October 2017
- 04:1104:11, 12 October 2017 diff hist +61 Fst →realSFS fst print
26 September 2017
- 17:0917:09, 26 September 2017 diff hist +62 Fasta No edit summary
- 17:0217:02, 26 September 2017 diff hist +43 Fasta →Brief Overview
- 17:0117:01, 26 September 2017 diff hist +25 Fasta No edit summary
- 17:0017:00, 26 September 2017 diff hist +26 Fasta No edit summary
8 September 2017
- 08:3908:39, 8 September 2017 diff hist +118 Fst →realSFS fst print
- 08:3008:30, 8 September 2017 diff hist −81 Fst →realSFS fst print
27 June 2017
- 20:2420:24, 27 June 2017 diff hist +116 SnpFilters →Example run with hetfilter current
- 20:2220:22, 27 June 2017 diff hist +6 SnpFilters →Example run with hetfilter
- 20:2220:22, 27 June 2017 diff hist +6 SnpFilters →Example run with hetfilter
- 20:2220:22, 27 June 2017 diff hist +1,803 SnpFilters →Example run with hetfilter
- 20:2120:21, 27 June 2017 diff hist +134 SnpFilters →Example run with hetfilter
- 20:2020:20, 27 June 2017 diff hist +32 SnpFilters No edit summary
- 20:0520:05, 27 June 2017 diff hist +128 SnpFilters No edit summary
22 June 2017
- 17:2117:21, 22 June 2017 diff hist +46 Input →Arguments
- 16:5816:58, 22 June 2017 diff hist 0 Installation No edit summary
- 16:5616:56, 22 June 2017 diff hist +60 Change log No edit summary
- 16:5616:56, 22 June 2017 diff hist 0 MediaWiki:Sitenotice No edit summary
- 16:5316:53, 22 June 2017 diff hist −10 Thorfinn →Make a new github version to put on github
- 16:5216:52, 22 June 2017 diff hist +119 Thorfinn →Make a new github version to put on github
- 16:5016:50, 22 June 2017 diff hist 0 Thorfinn →Make a new github version to put on github
- 16:5016:50, 22 June 2017 diff hist +55 Thorfinn →Make a new github version to put on github
- 16:4916:49, 22 June 2017 diff hist +9 Thorfinn →Make a new github version to put on github
- 16:4816:48, 22 June 2017 diff hist −53 Thorfinn →Make a new github version to put on github
- 16:4716:47, 22 June 2017 diff hist +4 Thorfinn →Make a combined angsd htslib to put on wiki download
- 16:3216:32, 22 June 2017 diff hist +6 Thorfinn →Make a combined angsd htslib to put on wiki download
- 16:3116:31, 22 June 2017 diff hist −68 Thorfinn →Make a combined angsd htslib to put on wiki download
- 16:3016:30, 22 June 2017 diff hist −3 Thorfinn →Make a combined angsd htslib to put on wiki download
- 16:3016:30, 22 June 2017 diff hist +103 Thorfinn →Make a combined angsd htslib to put on wiki download
31 May 2017
- 15:1715:17, 31 May 2017 diff hist +18 Input →Arguments
29 May 2017
8 February 2017
- 17:5917:59, 8 February 2017 diff hist +1 Thetas,Tajima,Neutrality tests →.thetas.gz.pestPG
- 17:5817:58, 8 February 2017 diff hist +64 Thetas,Tajima,Neutrality tests →Example
- 17:5717:57, 8 February 2017 diff hist +1 Thetas,Tajima,Neutrality tests →./thetaStat print angsdput.thetas.gz
- 17:5617:56, 8 February 2017 diff hist +42 Thetas,Tajima,Neutrality tests →Example Output
- 17:5517:55, 8 February 2017 diff hist +1 Thetas,Tajima,Neutrality tests →Step 3b: Sliding Window example
- 17:5417:54, 8 February 2017 diff hist +2 Thetas,Tajima,Neutrality tests →Step 3a: Estimate Tajimas D and other statistics
- 17:5417:54, 8 February 2017 diff hist +1 Thetas,Tajima,Neutrality tests →Full command list for below examples
- 17:5317:53, 8 February 2017 diff hist +934 ThetaStat No edit summary
- 17:5017:50, 8 February 2017 diff hist −112 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 17:4917:49, 8 February 2017 diff hist −14 Thetas,Tajima,Neutrality tests →Step 3b: Sliding Window example
- 17:4817:48, 8 February 2017 diff hist −157 Thetas,Tajima,Neutrality tests →Step 3a: Estimate Tajimas D and other statistics
- 17:4717:47, 8 February 2017 diff hist +6 Thetas,Tajima,Neutrality tests →Step 3a: Estimate Tajimas D and other statistics
- 17:4517:45, 8 February 2017 diff hist −101 Thetas,Tajima,Neutrality tests →Step 3a: Estimate Tajimas D and other statistics
- 17:4517:45, 8 February 2017 diff hist −35 Thetas,Tajima,Neutrality tests →Step 2: Calculate the thetas for each site
- 17:4417:44, 8 February 2017 diff hist −86 Thetas,Tajima,Neutrality tests →Step 2: Calculate the thetas for each site