ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Albrecht
Jump to navigation
Jump to search
12 July 2016
- 13:2513:25, 12 July 2016 diff hist +4 Relatedness No edit summary
- 13:2513:25, 12 July 2016 diff hist +703 N Relatedness Created page with " * NGSrelate - estimation of kinship coefficients In order to estimate kinship coefficient then population allele frequencies are needed. These can be estimated from data if ..."
- 13:2013:20, 12 July 2016 diff hist +2 MediaWiki:Sidebar No edit summary
- 13:1913:19, 12 July 2016 diff hist +88 MediaWiki:Sidebar No edit summary
7 June 2016
- 16:3316:33, 7 June 2016 diff hist 0 PCA MDS →sampled bases *ibs.gz
31 May 2016
- 13:3113:31, 31 May 2016 diff hist +30 PCA MDS No edit summary
- 12:4712:47, 31 May 2016 diff hist 0 PCA MDS No edit summary
- 12:4612:46, 31 May 2016 diff hist +222 PCA MDS →MDS/PCA using R
16 May 2016
- 12:2112:21, 16 May 2016 diff hist +8 PCA MDS →IBS
- 12:2012:20, 16 May 2016 diff hist +90 PCA MDS →Covariance
- 11:0711:07, 16 May 2016 diff hist 0 PCA MDS →Options
13 May 2016
- 12:3612:36, 13 May 2016 diff hist +188 PCA No edit summary
11 May 2016
- 09:3209:32, 11 May 2016 diff hist −95 PCA MDS →samples base *.ibsMat
28 April 2016
- 10:1610:16, 28 April 2016 diff hist +93 Genotype Likelihoods →SYK (Kim et al.)
- 10:1310:13, 28 April 2016 diff hist +11 Genotype Likelihoods →SYK (Kim et al.)
27 April 2016
- 17:5317:53, 27 April 2016 diff hist +2 PCA MDS →Output
- 17:5217:52, 27 April 2016 diff hist +6 PCA MDS →MDS/PCA using R
- 17:5117:51, 27 April 2016 diff hist 0 N File:PCA MDS.png No edit summary current
- 17:5117:51, 27 April 2016 diff hist 0 PCA MDS →MDS/PCA using R
- 17:4917:49, 27 April 2016 diff hist 0 File:IBD PCA.pdf Albrecht uploaded a new version of "File:IBD PCA.pdf" current
- 16:0716:07, 27 April 2016 diff hist +4 PCA MDS →MDS/PCA using R
- 16:0716:07, 27 April 2016 diff hist 0 N File:IBD PCA.pdf No edit summary
- 16:0616:06, 27 April 2016 diff hist +18 PCA MDS →MDS/PCA using R
- 16:0316:03, 27 April 2016 diff hist +406 PCA MDS No edit summary
- 16:0116:01, 27 April 2016 diff hist +54 PCA MDS →Model
- 15:4815:48, 27 April 2016 diff hist +1,455 PCA MDS →Output
- 15:4515:45, 27 April 2016 diff hist −160 PCA MDS →samples base *ibsMat
- 15:4415:44, 27 April 2016 diff hist +1,454 PCA MDS →Output
- 15:4315:43, 27 April 2016 diff hist +96 PCA MDS →Output
- 15:4215:42, 27 April 2016 diff hist −272 PCA MDS →Output
- 15:4115:41, 27 April 2016 diff hist +2,921 PCA MDS →Output
- 15:3415:34, 27 April 2016 diff hist −87 PCA MDS No edit summary
- 15:3315:33, 27 April 2016 diff hist +18 PCA MDS →Options
- 15:3215:32, 27 April 2016 diff hist +175 PCA MDS →Options
- 11:4711:47, 27 April 2016 diff hist +4,143 PCA MDS →single read sampling approach for PCA or MDS
- 11:2411:24, 27 April 2016 diff hist +143 PCA MDS No edit summary
- 11:2311:23, 27 April 2016 diff hist 0 PCA No edit summary
- 11:2211:22, 27 April 2016 diff hist +632 PCA No edit summary
- 11:2211:22, 27 April 2016 diff hist +48 N PCA MDS Created page with "= single read sampling approach for PCA or MDS ="
- 11:1211:12, 27 April 2016 diff hist +62 MediaWiki:Sidebar No edit summary
10 April 2016
- 17:0217:02, 10 April 2016 diff hist +8 HWE test No edit summary
- 16:5916:59, 10 April 2016 diff hist +207 HWE test No edit summary
- 16:4816:48, 10 April 2016 diff hist +2 HWE and Inbreeding estimates →Site estimate of inbreeding coefficient (HWE test)
- 16:2616:26, 10 April 2016 diff hist +5 HWE test No edit summary
- 16:2616:26, 10 April 2016 diff hist +184 HWE test →Use as a filter
- 16:1616:16, 10 April 2016 diff hist +567 HWE test No edit summary
- 16:0616:06, 10 April 2016 diff hist 0 HWE and Inbreeding estimates →Site estimate of inbreeding coefficient (HWE test)
- 16:0516:05, 10 April 2016 diff hist 0 HWE test →Output
- 16:0416:04, 10 April 2016 diff hist +7 HWE test →Output
- 16:0416:04, 10 April 2016 diff hist +439 HWE test →Output