ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Thorfinn
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7 May 2015
- 10:2710:27, 7 May 2015 diff hist +574 N Safv3 Created page with "We decided to update the native simple binary double format to a much more intelligent format that allows for random access. The format is described in doc/formats.pdf. This ..."
5 May 2015
- 20:5920:59, 5 May 2015 diff hist +5 MsToGlf →Two populations
- 14:0314:03, 5 May 2015 diff hist +659 SFS Estimation →New Version
- 13:5513:55, 5 May 2015 diff hist +471 SFS Estimation No edit summary
27 April 2015
- 17:0017:00, 27 April 2015 diff hist +72 Vcf →NB
- 16:5316:53, 27 April 2015 diff hist +4 Vcf →Output files
- 16:4716:47, 27 April 2015 diff hist +8,402 N Vcf Created page with "Newer versions of angsd (master 27april2015) supports basic vcf output. This will only include gl and gp tags which can be useful for certain external programs Supply ;-doVc..."
23 April 2015
- 20:2120:21, 23 April 2015 diff hist +1,506 Contamination →Interpretation of output
30 March 2015
- 20:5620:56, 30 March 2015 diff hist −5 Installation →Unix
- 20:5620:56, 30 March 2015 diff hist 0 Installation No edit summary
- 20:4520:45, 30 March 2015 diff hist −20 ANGSD No edit summary
27 March 2015
- 17:3817:38, 27 March 2015 diff hist −5 SnpFilters No edit summary
- 17:2517:25, 27 March 2015 diff hist +163 SnpFilters No edit summary
- 17:2117:21, 27 March 2015 diff hist +1,931 SnpFilters No edit summary
- 17:2017:20, 27 March 2015 diff hist +510 SnpFilters No edit summary
- 17:1217:12, 27 March 2015 diff hist +105 SnpFilters No edit summary
- 17:0717:07, 27 March 2015 diff hist +1 SnpFilters No edit summary
- 17:0717:07, 27 March 2015 diff hist +390 N SnpFilters Created page with "Angsd has different snpfilters. ;* SB1 strand bias1 ;* SB2 strand bias2 ;* SB3 strand bias3 ;* deviation from HWE ;* Wilcox rank sum test for position in read The 3 stran..."
- 17:0117:01, 27 March 2015 diff hist +26 MediaWiki:Sidebar No edit summary
- 13:1713:17, 27 March 2015 diff hist +2 Mismatch No edit summary
- 13:1713:17, 27 March 2015 diff hist +546 Mismatch No edit summary
- 13:1413:14, 27 March 2015 diff hist +157 N Mismatch Created page with "Angsd can output mismatch from the reference given: ;Distance from be beginning of the read (posi) ;Distance from the end of the read (isop) ;Strand ;Qscore"
- 13:1013:10, 27 March 2015 diff hist +22 MediaWiki:Sidebar No edit summary
17 March 2015
- 13:0513:05, 17 March 2015 diff hist 0 Beagle input →Example
6 March 2015
- 17:0017:00, 6 March 2015 diff hist −8 Input →VCF files
5 March 2015
- 17:3817:38, 5 March 2015 diff hist −115 MediaWiki:Sitenotice No edit summary
- 17:3517:35, 5 March 2015 diff hist −8 Thorfinn No edit summary
- 17:2817:28, 5 March 2015 diff hist +61 MediaWiki:Sitenotice No edit summary
- 17:2817:28, 5 March 2015 diff hist +54 MediaWiki:Sitenotice No edit summary
28 February 2015
- 00:4900:49, 28 February 2015 diff hist −39 Contamination No edit summary
26 February 2015
- 17:0717:07, 26 February 2015 diff hist +133 Input No edit summary
- 17:0617:06, 26 February 2015 diff hist +5 Input No edit summary
- 17:0517:05, 26 February 2015 diff hist −7 Bugs No edit summary current
- 17:0517:05, 26 February 2015 diff hist −20 Bugs No edit summary
- 16:4016:40, 26 February 2015 diff hist −5 Installation →Unix
- 16:3616:36, 26 February 2015 diff hist −21 Installation →Install CRAM version
- 16:3616:36, 26 February 2015 diff hist −107 Installation →Unix
- 16:3516:35, 26 February 2015 diff hist +19 Installation →Download
- 16:1716:17, 26 February 2015 diff hist +15 MediaWiki:Sitenotice No edit summary
- 16:1616:16, 26 February 2015 diff hist 0 Change log No edit summary
- 16:1616:16, 26 February 2015 diff hist +11 Change log No edit summary
- 15:5915:59, 26 February 2015 diff hist +60 Change log No edit summary
- 15:5815:58, 26 February 2015 diff hist +60 Change log No edit summary
- 15:5715:57, 26 February 2015 diff hist −51 MediaWiki:Sitenotice No edit summary
24 February 2015
- 23:2923:29, 24 February 2015 diff hist +242 ANGSD No edit summary
- 23:2623:26, 24 February 2015 diff hist +265 Installation →Install
- 23:2323:23, 24 February 2015 diff hist +56 Installation →Download
- 23:1623:16, 24 February 2015 diff hist +72 MediaWiki:Sitenotice No edit summary
21 February 2015
- 12:1812:18, 21 February 2015 diff hist 0 MediaWiki:Sitenotice No edit summary
- 12:1612:16, 21 February 2015 diff hist 0 Installation No edit summary