User contributions for Thorfinn

30 June 2014

• 14:1114:11, 30 June 2014 diff hist −16‎ Quick Start ‎ →‎Ancestral fasta file for hg19
• 14:0114:01, 30 June 2014 diff hist −2‎ Thetas,Tajima,Neutrality tests ‎ →‎Step 2: Calculate the thetas for each site
• 14:0014:00, 30 June 2014 diff hist −2‎ Thetas,Tajima,Neutrality tests ‎ →‎Step 1: Finding a 'global estimate' of the SFS
• 14:0014:00, 30 June 2014 diff hist +783‎ Thetas,Tajima,Neutrality tests ‎ →‎Example
• 13:5813:58, 30 June 2014 diff hist −567‎ Thetas,Tajima,Neutrality tests ‎ →‎Full command list for above examples
• 13:5813:58, 30 June 2014 diff hist +1‎ Thetas,Tajima,Neutrality tests ‎ →‎=Step 3b: Sliding Window example
• 13:5813:58, 30 June 2014 diff hist +10‎ Thetas,Tajima,Neutrality tests ‎ →‎Sliding Window example
• 13:5813:58, 30 June 2014 diff hist +1‎ Thetas,Tajima,Neutrality tests ‎ →‎Step 3: Estimate Tajimas D and other statistics
• 13:5713:57, 30 June 2014 diff hist +77‎ Thetas,Tajima,Neutrality tests ‎ →‎Full command list for above examples
• 13:5613:56, 30 June 2014 diff hist +433‎ Thetas,Tajima,Neutrality tests ‎ →‎Full command list for above examples
• 13:5413:54, 30 June 2014 diff hist +57‎ Thetas,Tajima,Neutrality tests ‎ →‎Example Output
• 13:5313:53, 30 June 2014 diff hist −6‎ Thetas,Tajima,Neutrality tests ‎ →‎Output of the .thetas.gz file
• 13:5313:53, 30 June 2014 diff hist +7‎ Thetas,Tajima,Neutrality tests ‎ →‎Estimate Tajimas D and other statistics
• 13:5213:52, 30 June 2014 diff hist −1‎ Thetas,Tajima,Neutrality tests ‎ →‎Estimate Tajimas D and other statistics
• 13:5213:52, 30 June 2014 diff hist +1‎ Thetas,Tajima,Neutrality tests ‎ →‎Step2: Calculate the thetas for each site
• 13:5213:52, 30 June 2014 diff hist −2‎ Thetas,Tajima,Neutrality tests ‎ →‎Step 1: Finding a 'global estimate' of the SFS
• 13:5113:51, 30 June 2014 diff hist +7‎ Thetas,Tajima,Neutrality tests ‎ →‎Calculate the thetas for each site
• 13:5113:51, 30 June 2014 diff hist +4,293‎ Thetas,Tajima,Neutrality tests ‎ →‎Estimate Tajimas D and other statistics
• 13:4813:48, 30 June 2014 diff hist +26‎ Thetas,Tajima,Neutrality tests ‎ →‎Output of the .thetas.gz file
• 13:4513:45, 30 June 2014 diff hist +2‎ Thetas,Tajima,Neutrality tests ‎ →‎Output of the .thetas.gz file
• 13:4413:44, 30 June 2014 diff hist +6‎ Thetas,Tajima,Neutrality tests ‎ →‎Step 1: Finding a 'global estimate' of the SFS
• 13:4313:43, 30 June 2014 diff hist +1‎ Thetas,Tajima,Neutrality tests ‎ →‎Step 1: Finding a 'global estimate' of the SFS=
• 13:4313:43, 30 June 2014 diff hist +4‎ Thetas,Tajima,Neutrality tests ‎ →‎Example
• 13:4313:43, 30 June 2014 diff hist +48‎ Thetas,Tajima,Neutrality tests ‎ →‎Example
• 13:4113:41, 30 June 2014 diff hist −3‎ Thetas,Tajima,Neutrality tests ‎ →‎Output of the .thetas.gz file
• 13:4013:40, 30 June 2014 diff hist −21‎ Thetas,Tajima,Neutrality tests ‎ →‎Example
• 13:4013:40, 30 June 2014 diff hist +103‎ Thetas,Tajima,Neutrality tests ‎ →‎Example
• 13:3813:38, 30 June 2014 diff hist +1,060‎ Thetas,Tajima,Neutrality tests ‎ →‎Example
• 13:3613:36, 30 June 2014 diff hist +44‎ N Tajima ‎ Thorfinn moved page Tajima to Thetas,Tajima,Neutrality tests current
• 13:3613:36, 30 June 2014 diff hist 0‎ m Thetas,Tajima,Neutrality tests ‎ Thorfinn moved page Tajima to Thetas,Tajima,Neutrality tests
• 13:3313:33, 30 June 2014 diff hist −2‎ Thetas,Tajima,Neutrality tests ‎ →‎Sliding Window example
• 13:3213:32, 30 June 2014 diff hist +33‎ Quick Start ‎ →‎Finding the SFS
• 13:3113:31, 30 June 2014 diff hist +60‎ Quick Start ‎ →‎Finding the SFS
• 13:2913:29, 30 June 2014 diff hist −1‎ 2d SFS Estimation ‎No edit summary
• 13:2813:28, 30 June 2014 diff hist −4‎ 2d SFS Estimation ‎ →‎Example
• 13:2713:27, 30 June 2014 diff hist +10‎ SFS Estimation ‎ →‎How to plot
• 13:2713:27, 30 June 2014 diff hist −1‎ SFS Estimation ‎ →‎Posterior of the per-site distributions of the sample allele frequency
• 13:2613:26, 30 June 2014 diff hist +5‎ SFS Estimation ‎ →‎Interpretation of the output file
• 13:2613:26, 30 June 2014 diff hist +5‎ SFS Estimation ‎ →‎Example
• 13:2613:26, 30 June 2014 diff hist −1‎ SFS Estimation ‎ →‎Options
• 13:2513:25, 30 June 2014 diff hist −1‎ SFS Estimation ‎ →‎Brief Overview
• 13:2513:25, 30 June 2014 diff hist −2‎ SFS Estimation ‎ →‎Brief Overview
• 13:2413:24, 30 June 2014 diff hist −3‎ MsToGlf ‎ →‎Two populations
• 13:2413:24, 30 June 2014 diff hist +5‎ MsToGlf ‎ →‎Two populations
• 13:2313:23, 30 June 2014 diff hist +5‎ RealSFSmethod ‎ →‎Likelihood of the SFS current
• 13:2313:23, 30 June 2014 diff hist +5‎ Fst PCA ‎No edit summary
• 13:2213:22, 30 June 2014 diff hist +5‎ RealSFS ‎ →‎1d SFS
• 13:2113:21, 30 June 2014 diff hist −3‎ RealSFS ‎ →‎2dsfs
• 13:2113:21, 30 June 2014 diff hist −2‎ RealSFS ‎ →‎1d SFS
• 13:2113:21, 30 June 2014 diff hist −2‎ RealSFS ‎No edit summary