Gatk

McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePristo MA (2010). The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20:1297-303.

Bibtex

@Article{pmid21903627,
   Author="Li, H. ",
   Title="{{A} statistical framework for {S}{N}{P} calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data}",
   Journal="Bioinformatics",
   Year="2011",
   Volume="27",
   Number="21",
   Pages="2987--2993",
   Month="Nov"
}

doi

doi: 10.1101/gr.107524