ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
MediaWiki:Sitenotice
ANGSD: Analysis of next generation Sequencing Data
Github branch withhtslib now supports CRAM files through htslib.
http://www.biomedcentral.com/1471-2105/15/356/abstract
Latest version is 0.615, see Change_log for changes, and download it here.