ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.

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Revision as of 15:16, 18 June 2012 by Albrecht (talk | contribs)
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  • Pages
    • Main_Page#Overview|Overview
    • Download_and_installation|Installation
    • Input|input data
  • Summaries
    • alleles_counts|allele counts


  • Methods
    • realSFS|realSFS
    • Genotype_likelihoods_from_alignments|Genotypes likelihoods
    • Inferring_Major_and_Minor_alleles|Major and Minor
    • Error_estimation|Error estimation
    • Allele_Frequency_estimation|Allele frequencies
    • SNP_Calling|SNP Calling
    • Covariance_matrix_for_PCA|PCA
    • Association|Association
    • Heterozygosity|Heterozogosity
    • HWE_and_Inbreeding_estimates|HWE and inbreeding
    • Genotype calling
  • Output for other programs
    • beagle_input|beagle input files
    • Glf_files|Genotype likelihood files
  • navigation
    • mainpage|mainpage-description
    • portal-url|portal
    • currentevents-url|currentevents
    • recentchanges-url|recentchanges
    • randompage-url|randompage
    • helppage|help
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