Installation

Download

The latest version of the source code is avaible as a tarball and be download here [1]

Earlier versions from here: http://popgen.dk/software/download/angsd/

You might also be interested in a version where we allow for deviations from HWE such as inbreeding. This can be found here [2]

Install

Unpack the tarball

Unix

The software can be compiled using make

wget http://popgen.dk/software/download/angsd/angsd0.538.tar.gz
tar xfz angsd0.538.tar.gz
cd angsd0.538
make
cd ..

zlib needs to be installed on your system.

Or users that wants to try the latest version (where there might be bugs).

wget http://popgen.dk/software/download/angsd/angsd0.553.tar.gz
tar xfz angsd0.553.tar.gz
cd angsd0.553
make
cd ..