ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.

HWE and Inbreeding estimates

From angsd
Revision as of 14:47, 6 January 2014 by Thorfinn (talk | contribs)
Jump to navigation Jump to search

Filipe G. Vieira has been extending the ANGSD feature set by

  1. A method for estimating inbreeding (deviation from Hardy-Weinberg) based on output from ANGSD.
  2. Some parts of the ANGSD code will work for inbreeding estimates version 0.572+.

HWE and Inbreeding estimates

For method details see here And the most recent version of the stand alone program is here https://github.com/fgvieira/ngsF.

Retrieved from "https://www.popgen.dk/angsd/index.php?title=HWE_and_Inbreeding_estimates&oldid=1590"