ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
RealSFS: Difference between revisions
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This program will estimate the SFS based on a .sfs file generated from the '''./angsd [options] -doRealSFS '''. | This program will estimate the SFS based on a .sfs file generated from the '''./angsd [options] -doRealSFS '''. | ||
=Brief overview= | |||
<pre> | |||
./emOptim2 afile.sfs nChr [-start FNAME -P nThreads -tole tole -maxIter -nSites ] | |||
nChr is the number of chromosomes. (twice the number of diploid invididuals) | |||
</pre> | |||
=Output= | |||
Main results are printed to the stdout. Values are in logspace. | |||
Revision as of 16:22, 3 October 2013
This program will estimate the SFS based on a .sfs file generated from the ./angsd [options] -doRealSFS .
Brief overview
./emOptim2 afile.sfs nChr [-start FNAME -P nThreads -tole tole -maxIter -nSites ] nChr is the number of chromosomes. (twice the number of diploid invididuals)
Output
Main results are printed to the stdout. Values are in logspace.