ANGSD: Analysis of next generation Sequencing Data
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Thetas,Tajima,Neutrality tests: Difference between revisions
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(Created page with "Angsd can estimate the Tajimas D and other neutrality test.") |
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Angsd can estimate the Tajimas D and other neutrality test. | Angsd can estimate the Tajimas D and other neutrality test. | ||
Method works by using the posterior allele frequencies for every site, and uses these for calculating different per-site estimates of theta. | |||
Due to the linearity the population scaled mutation rate is therefore the sum of the per-site estimates | |||
Revision as of 01:44, 18 December 2012
Angsd can estimate the Tajimas D and other neutrality test. Method works by using the posterior allele frequencies for every site, and uses these for calculating different per-site estimates of theta. Due to the linearity the population scaled mutation rate is therefore the sum of the per-site estimates