ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
Installation: Difference between revisions
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The source code is avaible as a tarball and be download here | The source code is avaible as a tarball and be download here | ||
[http://popgen.dk/software/download/angsd/angsd0. | [http://popgen.dk/software/download/angsd/angsd0.449.tar.gz] | ||
Earlier versions from here: http://popgen.dk/software/download/angsd/ | Earlier versions from here: http://popgen.dk/software/download/angsd/ | ||
An earlier version has been modified (by Filipe Vieira) to estimate and take into account inbreeding for some analysis. This version has not been tested and validated. | |||
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The software can be compiled using make | The software can be compiled using make | ||
<pre> | <pre> | ||
cd angsd0. | cd angsd0.449 | ||
make | make | ||
</pre> | </pre> | ||
zlib needs to be installed on your system. | zlib needs to be installed on your system. | ||
Revision as of 20:32, 16 December 2012
Download
The source code is avaible as a tarball and be download here [1]
Earlier versions from here: http://popgen.dk/software/download/angsd/
An earlier version has been modified (by Filipe Vieira) to estimate and take into account inbreeding for some analysis. This version has not been tested and validated.
The inbreeding version can be found here [2].
Install
Unpack the tarball
Unix
The software can be compiled using make
cd angsd0.449 make
zlib needs to be installed on your system.