ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.

Installation: Difference between revisions

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zlib needs to be installed on your system.
zlib needs to be installed on your system.
=Misc folder=
Misc folder contains:
1. simnextgen a program for simulating genotype likelihoods
2. getUnfolded, simnextgen only outputs the true folded frequency spectra. getUnfolded uses the "true" genotypes to estimate the unfolded spectra.
3. testfolded/optimSFS uses the .sfs output from -realSFS 1 to estimate the site frequency spectra polarized to the ancestral type.

Revision as of 14:41, 16 October 2012

Download

The source code is avaible as a tarball and be download here [1]

Earlier versions from here: http://popgen.dk/software/download/angsd/

Install

Unpack the tarball

Unix

The software can be compiled using make 

cd angsd0.445
make

zlib needs to be installed on your system.

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