Revision as of 14:06, 18 June 2015

Download and Installation

To download and use ANGSD you need to download the htslib and the angsd source folder

You can either download the angsd0.901.tar.gz which contains both. [1]

Or you can use github for the latest version of both htslib and angsd

Download and unpack the tarball, enter the directory and type make. Users on a mac computer, can use curl instead of wget.

The software can be compiled using make. zlib needs to be installed on your system.

wget http://popgen.dk/software/download/angsd/angsd0.901.tar.gz
tar xfz angsd0.901.tar.gz
cd angsd
make
cd ..

The executable then located in angsd/angsd.

To install CRAM support you also need to install htslib and can be done using the following commands

git clone https://github.com/samtools/htslib.git
git clone git://github.com/ANGSD/angsd.git 
cd angsd
make

@@ Line 9: / Line 9: @@
 Earlier versions from here: http://popgen.dk/software/download/angsd/
 And here: https://github.com/ANGSD/angsd/releases
+=Install=
+Download and unpack the tarball, enter the directory and type make. Users on a mac computer, can use curl instead of wget.
+===Unix===
+The software can be compiled using make. zlib needs to be installed on your system.
+<pre>
+wget http://popgen.dk/software/download/angsd/angsd0.901.tar.gz
+tar xfz angsd0.901.tar.gz
+cd angsd
+make
+cd ..
+</pre>
+The executable then located in '''angsd/angsd'''.
 =Install from github=