ANGSD: Analysis of next generation Sequencing Data
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SnpFilters: Difference between revisions
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(Created page with "Angsd has different snpfilters. ;* SB1 strand bias1 ;* SB2 strand bias2 ;* SB3 strand bias3 ;* deviation from HWE ;* Wilcox rank sum test for position in read The 3 stran...") |
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The 3 strand bias filters are described here: http://www.biomedcentral.com/1471-2164/13/666 | The 3 strand bias filters are described here: http://www.biomedcentral.com/1471-2164/13/666 | ||
The deviation from HWE is described in http://www.ncbi.nlm.nih.gov/pubmed/23950147 | The deviation from HWE is described in http://www.ncbi.nlm.nih.gov/pubmed/23950147 | ||
The wilcox rank sum test is not described anywhere | The wilcox rank sum test is not described anywhere | ||
Revision as of 16:07, 27 March 2015
Angsd has different snpfilters.
- SB1 strand bias1
- SB2 strand bias2
- SB3 strand bias3
- deviation from HWE
- Wilcox rank sum test for position in read
The 3 strand bias filters are described here: http://www.biomedcentral.com/1471-2164/13/666
The deviation from HWE is described in http://www.ncbi.nlm.nih.gov/pubmed/23950147
The wilcox rank sum test is not described anywhere