ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
Installation: Difference between revisions
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The executable then located in '''angsd0.615/angsd'''. | The executable then located in '''angsd0.615/angsd'''. | ||
=Install | =Install from github= | ||
To install CRAM support you also need to install htslib and can be done using the following commands | To install CRAM support you also need to install htslib and can be done using the following commands | ||
<pre> | <pre> | ||
git clone https://github.com/samtools/htslib.git | git clone https://github.com/samtools/htslib.git | ||
git clone | git clone git://github.com/ANGSD/angsd.git | ||
cd angsd | cd angsd | ||
make | make | ||
</pre> | </pre> | ||
Revision as of 15:36, 26 February 2015
Download and Installation
To download and use ANGSD you need to download the htslib and the angsd source folder
You can either download the angsd0.700.tar.gz which contains both. [1]
Or you can use github for the latest version of both htslib and angsd
Earlier versions from here: http://popgen.dk/software/download/angsd/
Install
Download and unpack the tarball, enter the directory and type make. Users on a mac computer, can use curl instead of wget.
Unix
The software can be compiled using make. zlib needs to be installed on your system.
wget http://popgen.dk/software/download/angsd/angsd0.700.tar.gz tar xfz angsd0.700.tar.gz cd angsd0.700 make cd ..
The executable then located in angsd0.615/angsd.
Install from github
To install CRAM support you also need to install htslib and can be done using the following commands
git clone https://github.com/samtools/htslib.git git clone git://github.com/ANGSD/angsd.git cd angsd make