ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
Installation: Difference between revisions
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The latest stabile version of the source code is avaible as a tarball and be download here | The latest stabile version of the source code is avaible as a tarball and be download here | ||
[http://popgen.dk/software/download/angsd/angsd0. | [http://popgen.dk/software/download/angsd/angsd0.610.tar.gz] | ||
Earlier versions from here: http://popgen.dk/software/download/angsd/ | Earlier versions from here: http://popgen.dk/software/download/angsd/ | ||
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<pre> | <pre> | ||
wget http://popgen.dk/software/download/angsd/angsd0.609.tar.gz | wget http://popgen.dk/software/download/angsd/angsd0.609.tar.gz | ||
tar xfz angsd0. | tar xfz angsd0.610.tar.gz | ||
cd angsd0. | cd angsd0.610 | ||
make | make | ||
cd .. | cd .. | ||
</pre> | </pre> | ||
The executable then located in '''angsd0. | The executable then located in '''angsd0.610/angsd'''. | ||
;NB the program also compiles a static version called '''angsd0.609/angsd''' which could be usefull. | ;NB the program also compiles a static version called '''angsd0.609/angsd''' which could be usefull. |
Revision as of 08:55, 20 July 2014
Download
The latest stabile version of the source code is avaible as a tarball and be download here [1]
Earlier versions from here: http://popgen.dk/software/download/angsd/
Latest dev version can be found on github: https://github.com/ANGSD/angsd
Install
Download and unpack the tarball, enter the directory and type make. Users on a mac computer, can use curl instead of wget.
Unix
The software can be compiled using make. zlib needs to be installed on your system.
wget http://popgen.dk/software/download/angsd/angsd0.609.tar.gz tar xfz angsd0.610.tar.gz cd angsd0.610 make cd ..
The executable then located in angsd0.610/angsd.
- NB the program also compiles a static version called angsd0.609/angsd which could be usefull.