ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
Installation: Difference between revisions
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The software can be compiled using make. zlib needs to be installed on your system. | The software can be compiled using make. zlib needs to be installed on your system. | ||
<pre> | <pre> | ||
wget http://popgen.dk/software/download/angsd/angsd0. | wget http://popgen.dk/software/download/angsd/angsd0.607.tar.gz | ||
tar xfz angsd0. | tar xfz angsd0.607.tar.gz | ||
cd angsd0. | cd angsd0.607 | ||
make | make | ||
cd .. | cd .. | ||
</pre> | </pre> | ||
The executable then located in '''angsd0.607/angsd'''. | |||
;NB the program also compiles a static version called '''angsd0.607/angsd''' which could be usefull. | |||
Revision as of 13:36, 27 June 2014
Download
The latest version of the source code is avaible as a tarball and be download here [1]
Earlier versions from here: http://popgen.dk/software/download/angsd/
Install
Download and unpack the tarball, enter the directory and type make. Users on a mac computer, can use curl instead of wget.
Unix
The software can be compiled using make. zlib needs to be installed on your system.
wget http://popgen.dk/software/download/angsd/angsd0.607.tar.gz tar xfz angsd0.607.tar.gz cd angsd0.607 make cd ..
The executable then located in angsd0.607/angsd.
- NB the program also compiles a static version called angsd0.607/angsd which could be usefull.