ANGSD: Analysis of next generation Sequencing Data
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Base quality: Difference between revisions
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Counts the number of bases for each quality score. | Counts the number of bases for each quality score. | ||
; -doQsDist 1 | |||
==Example== | ==Example== | ||
Revision as of 16:22, 19 September 2012
Counts the number of bases for each quality score.
- -doQsDist 1
Example
Print the number of
./angsd -out out -doCounts 1 -doQsDist 1 -bam bam.filelist
output
First coloums is the quality score the second one the number of bases with this score.
0 3113 1 15619 2 97044 3 68369 4 117163 5 12149 6 15016 7 17982 8 21897 9 26471 10 31854 11 36491 12 41649 13 47400 14 53778 15 61933 16 73120 17 87034 . . .