ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User:Thorfinn: Difference between revisions
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| Line 26: | Line 26: | ||
fprintf(stderr,"./a.out [make_bed|do_stat|validate_bed|print]\n"); | fprintf(stderr,"./a.out [make_bed|do_stat|validate_bed|print]\n"); | ||
} in thetaStat | } in thetaStat | ||
=Addtional methods and functionality= | =Addtional methods and functionality= | ||
# make haploid 1dsfs | # make haploid 1dsfs | ||
Revision as of 16:27, 5 March 2014
Wiki doc
- write how on website: Thetas,Tajima,Neutrality test needs documentation and examples files
- user custom class missing
Code fix
- -samglfclean not documented
- soap usage is not documented
- fix -doFasta for single chromosomes.
- from morten shitoutput
h1 h2 h3 = 7 10 5 has less than 3 blocks. skipping h1 h2 h3 = 8 10 5 has less than 3 blocks. skipping h1 h2 h3 = 10 11 5 has less than 3 blocks. skipping h1 h2 h3 = 7 12 5 has less than 3 blocks. skipping h1 h2 h3 = 10 12 5 has less than 3 blocks. skipping h1 h2 h3 = 10 13 5 has less than 3 blocks. skipping h1 h2 h3 = 10 15 5 has less than 3 blocks. skipping h1 h2 h3 = 7 10 6 has less than 3 blocks. skipping h1 h2 h3 = 8 10 6 has less than 3 blocks. skipping h1 h2 h3 = 9 10 6 has less than 3 blocks. skipping h1…
- fix }else{
fprintf(stderr,"./a.out [make_bed|do_stat|validate_bed|print]\n"); } in thetaStat
Addtional methods and functionality
- make haploid 1dsfs