ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
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* SFStools is now included in main ANGSD, | * SFStools is now included in main ANGSD, no need for double keeping of annoying big files. | ||
* -filter is now called -sites, which makes more sense. Since it was a site filter | * -filter is now called -sites, which makes more sense. Since it was a site filter | ||
* -realSFS is now called -doSaf, and the output is no longer called .sfs but .saf. Which makes more sense. It wasn't the site frequency spectrum but the sample allele frequencies | * -realSFS is now called -doSaf, and the output is no longer called .sfs but .saf. Which makes more sense. It wasn't the site frequency spectrum but the sample allele frequencies | ||
Latest revision as of 18:02, 17 December 2013
- SFStools is now included in main ANGSD, no need for double keeping of annoying big files.
- -filter is now called -sites, which makes more sense. Since it was a site filter
- -realSFS is now called -doSaf, and the output is no longer called .sfs but .saf. Which makes more sense. It wasn't the site frequency spectrum but the sample allele frequencies
- Program can now do ABBABABA and consensus fasta.
- many internal changes and bug fixes, that should make little difference
Sorry for having to do these changes.