ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
Angsd structure: Difference between revisions
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# Analysis | # Analysis | ||
==Input formats== | |||
We allow for many different input formats, many of these are deprecated and have little use, but we have decided to keep these. | We allow for many different input formats, many of these are deprecated and have little use, but we have decided to keep these. | ||
# BAM files | # BAM files | ||
Revision as of 18:36, 4 December 2013
This page contains a short description of the overall structure of angsd.
It can be divided into:
- Filereading
- Analysis
Input formats
We allow for many different input formats, many of these are deprecated and have little use, but we have decided to keep these.
- BAM files
- soap alignment files
- Beagle files
- glfv3 (Binary and text)
History
Angsd started back in 2009 as a simple program for estimating allele frequency, based on this we incrementally added new functionality. A rough timeline can be found in the AUTHORS file in the program bundle