ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.

Installation: Difference between revisions

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The latest version of the source code is avaible as a tarball and be download here
The latest version of the source code is avaible as a tarball and be download here
[http://popgen.dk/software/download/angsd/angsd0.556.tar.gz]
[http://popgen.dk/software/download/angsd/angsd0.557.tar.gz]


Earlier versions from here: http://popgen.dk/software/download/angsd/
Earlier versions from here: http://popgen.dk/software/download/angsd/
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<pre>
<pre>
wget http://popgen.dk/software/download/angsd/angsd0.556.tar.gz
wget http://popgen.dk/software/download/angsd/angsd0.556.tar.gz
tar xfz angsd0.556.tar.gz
tar xfz angsd0.557.tar.gz
cd angsd0.556
cd angsd0.557
make
make
cd ..
cd ..

Revision as of 17:01, 22 November 2013

Download

The latest version of the source code is avaible as a tarball and be download here [1]

Earlier versions from here: http://popgen.dk/software/download/angsd/

You might also be interested in a version where we allow for deviations from HWE such as inbreeding. This can be found here [2]

Install

Download and unpack the tarball, enter the directory and type make. Users on a mac computer, can use curl instead of wget.

Unix

The software can be compiled using make. zlib needs to be installed on your system.

wget http://popgen.dk/software/download/angsd/angsd0.556.tar.gz
tar xfz angsd0.557.tar.gz
cd angsd0.557
make
cd ..

Or for users who prefer the last super stable release.

wget http://popgen.dk/software/download/angsd/angsd0.538.tar.gz
tar xfz angsd0.538.tar.gz
cd angsd0.538
make
cd ..

Or for users who prefer the inbreeding version.

wget http://popgen.dk/software/download/angsd/angsd0.543i.tar.gz
tar xfz angsd0.543i.tar.gz
cd angsd0.543i
make
cd ..