ANGSD: Analysis of next generation Sequencing Data
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Allele Frequencies: Difference between revisions
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==Allele frequencies from genotype likelihoods== | ==Allele frequencies from genotype likelihoods== | ||
The allele frequency estimators are described in [suYeon|citation]. The | The allele frequency estimators are described in [[suYeon | citation]]. The | ||
===ML estimator with known minor=== | ===ML estimator with known minor=== | ||
Revision as of 10:14, 15 June 2012
Allele Frequency estimation
- -doMaf [int]
INT=1 bfgs known minor
INT=2 EM known minor
INT=4 BFGS unknown minor
INT=8 EM unknown minor
INT=16 frequencies from genotype probabilities
Allele frequencies from genotype likelihoods
The allele frequency estimators are described in citation. The