ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
Installation: Difference between revisions
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The latest version of the source code is avaible as a tarball and be download here | The latest version of the source code is avaible as a tarball and be download here | ||
[http://popgen.dk/software/download/angsd/angsd0. | [http://popgen.dk/software/download/angsd/angsd0.531.tar.gz] | ||
Earlier versions from here: http://popgen.dk/software/download/angsd/ | Earlier versions from here: http://popgen.dk/software/download/angsd/ | ||
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The software can be compiled using make | The software can be compiled using make | ||
<pre> | <pre> | ||
wget http://popgen.dk/software/download/angsd/angsd0. | wget http://popgen.dk/software/download/angsd/angsd0.531.tar.gz | ||
tar xfz angsd0. | tar xfz angsd0.531.tar.gz | ||
cd angsd0. | cd angsd0.531 | ||
make | make | ||
cd .. | cd .. | ||
</pre> | </pre> | ||
zlib needs to be installed on your system. | zlib needs to be installed on your system. | ||
Revision as of 10:47, 5 May 2013
Download
The latest version of the source code is avaible as a tarball and be download here [1]
Earlier versions from here: http://popgen.dk/software/download/angsd/
An earlier version has been modified (by Filipe Vieira) to estimate and take into account inbreeding for some analysis. This version has not been tested and validated.
The inbreeding version can be found here [2].
Install
Unpack the tarball
Unix
The software can be compiled using make
wget http://popgen.dk/software/download/angsd/angsd0.531.tar.gz tar xfz angsd0.531.tar.gz cd angsd0.531 make cd ..
zlib needs to be installed on your system.