Citing angsd: Difference between revisions

Revision as of 13:14, 10 October 2012

Currently there is not publication for angsd. However, many of the method implimented here are published.

allele estimation from genotype likelihoods

SNP calling based on genotype likelihoods

same as in samtools Li2010

same as in gatk

same as in soapSNP

same as in kim2011

using score statistic Skotte2012

using allele frequencies kim2011

Estimating the site frequency spectrum Nielsen2012

@@ Line 29: / Line 29: @@
 ; -doAsso 1 or 3
 using allele frequencies [[kim2011]]
+===SFS estimation===
+Estimating the site frequency spectrum [[Nielsen2012]]