Citing angsd: Difference between revisions

Revision as of 12:55, 24 September 2012

Currently there is not publication for angsd. However, many of the method implimented here are published.

allele estimation from genotype likelihoods

SNP calling based on genotype likelihoods

same as in samtools Li2010

same as in gatk

same as in soapSNP

same as in kim2011

using score statistic Skotte2012

using allele frequencies kim2011

@@ Line 22: / Line 22: @@
 ; -GL 4
 same as in [[kim2011]]
+===Association===
+; -doAsso 2
+using score statistic [[Skotte2012]]
+; -doAsso 1 or 3
+using allele frequencies [[kim2011]]