ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
Installation: Difference between revisions
| Line 24: | Line 24: | ||
The executable then located in '''angsd0.615/angsd'''. | The executable then located in '''angsd0.615/angsd'''. | ||
;NB the program also compiles a static version called '''angsd0.615/angsd.static''' which could be usefull. | ;NB the program also compiles a static version called '''angsd0.615/angsd.static''' which could be usefull. | ||
=Install CRAM version= | |||
To install CRAM support you also need to install htslib and can be done using the following commands | |||
<pre> | |||
git clone https://github.com/samtools/htslib.git | |||
git clone --branch=withhtslib git://github.com/ANGSD/angsd.git | |||
cd angsd | |||
make | |||
</pre> | |||
Revision as of 22:26, 24 February 2015
Download
The latest stabile version of the source code is avaible as a tarball and be download here [1]
Earlier versions from here: http://popgen.dk/software/download/angsd/
Latest dev version can be found on github: https://github.com/ANGSD/angsd
The branch withhtslib now supports cram reading.
Install
Download and unpack the tarball, enter the directory and type make. Users on a mac computer, can use curl instead of wget.
Unix
The software can be compiled using make. zlib needs to be installed on your system.
wget http://popgen.dk/software/download/angsd/angsd0.615.tar.gz tar xfz angsd0.615.tar.gz cd angsd0.615 make cd ..
The executable then located in angsd0.615/angsd.
- NB the program also compiles a static version called angsd0.615/angsd.static which could be usefull.
Install CRAM version
To install CRAM support you also need to install htslib and can be done using the following commands
git clone https://github.com/samtools/htslib.git git clone --branch=withhtslib git://github.com/ANGSD/angsd.git cd angsd make