ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.

Installation: Difference between revisions

From angsd
Jump to navigation Jump to search
No edit summary
No edit summary
Line 2: Line 2:


The latest stabile version of the source code is avaible as a tarball and be download here
The latest stabile version of the source code is avaible as a tarball and be download here
[http://popgen.dk/software/download/angsd/angsd0.612.tar.gz]
[http://popgen.dk/software/download/angsd/angsd0.613.tar.gz]


Earlier versions from here: http://popgen.dk/software/download/angsd/
Earlier versions from here: http://popgen.dk/software/download/angsd/
Line 14: Line 14:
The software can be compiled using make. zlib needs to be installed on your system.
The software can be compiled using make. zlib needs to be installed on your system.
<pre>
<pre>
wget http://popgen.dk/software/download/angsd/angsd0.612.tar.gz
wget http://popgen.dk/software/download/angsd/angsd0.613.tar.gz
tar xfz angsd0.612.tar.gz
tar xfz angsd0.613.tar.gz
cd angsd0.612
cd angsd0.613
make
make
cd ..
cd ..
</pre>
</pre>
The executable then located in '''angsd0.612/angsd'''.
The executable then located in '''angsd0.613/angsd'''.
;NB the program also compiles a static version called '''angsd0.612/angsd.static''' which could be usefull.
;NB the program also compiles a static version called '''angsd0.613/angsd.static''' which could be usefull.

Revision as of 11:23, 4 November 2014

Download

The latest stabile version of the source code is avaible as a tarball and be download here [1]

Earlier versions from here: http://popgen.dk/software/download/angsd/

Latest dev version can be found on github: https://github.com/ANGSD/angsd

Install

Download and unpack the tarball, enter the directory and type make. Users on a mac computer, can use curl instead of wget.

Unix

The software can be compiled using make. zlib needs to be installed on your system.

wget http://popgen.dk/software/download/angsd/angsd0.613.tar.gz
tar xfz angsd0.613.tar.gz
cd angsd0.613
make
cd ..

The executable then located in angsd0.613/angsd.

NB the program also compiles a static version called angsd0.613/angsd.static which could be usefull.