ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
Filters: Difference between revisions
Jump to navigation
Jump to search
(Created page with "In most analysis you are only interested in a subset of sites and not all sites. Currently we have the following filter options. 1. ;-minMaf float: only work with sites with...") |
No edit summary |
||
| Line 3: | Line 3: | ||
1. ;-minMaf float: only work with sites with a maf above 'float' | 1. ;-minMaf float: only work with sites with a maf above 'float' | ||
2. ;-minKeepInd int; only work with sites with information from atleast int individiduals | 2. ;-minKeepInd int; only work with sites with information from atleast int individiduals | ||
3. ;-minLRT float: only work with sits with an LRT>float | 3. ;-minLRT float: only work with sits with an LRT>float | ||
Revision as of 11:42, 19 June 2012
In most analysis you are only interested in a subset of sites and not all sites. Currently we have the following filter options.
1. ;-minMaf float: only work with sites with a maf above 'float'
2. ;-minKeepInd int; only work with sites with information from atleast int individiduals
3. ;-minLRT float: only work with sits with an LRT>float