User:Thorfinn: Difference between revisions

Revision as of 17:58, 7 December 2013

Thorfinns angsd todolist 0) fix return value

1) write error estimation on wiki, need more info

3. -filter to site

4. add single pars

@@ Line 4: / Line 4: @@
 ) write error estimation on wiki, need more info
-)
-<pre>
-Rscript ../../angsd0.565/R/estError.R
-Loading required package: remix
-Loading required package: plyr
-Loading required package: survival
-Loading required package: splines
-Warning message:
-no function found corresponding to methods exports from ‘ascii’ for: ‘show’
-->  needed arguments:
-	 file : the ancError File
-->  optional arguments (defaults):
-	 out  ( errorEst ) : Name of the out files
-	 indNames  ( ind ) : postFix, file with names or comma seperated names of individuals
-	 nIter  ( 100 ) : Numer of optimazation attemps
-	 subset  ( NA ) : comma seperated numbers of the individuals to include
-	 main  ( Error rate using an outgroup (Chimp) and a perfect man ) :
-	 maxErr  ( 0.02 ) : maximum allowed error rate
-	 height  ( 7 ) : height of the pdf
-	 width  ( 11 ) : width of the pdf
-	 cex  ( 1 ) : scale of names
-</pre>
 . -filter to site
 . add single pars